Ochrobactrum sp. POC9

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum sp. POC9 is characterized by a single replicon, indicating a streamlined genomic structure. This bacterium has been cataloged under the accession number QGST00000000.1, which serves as a unique identifier for its genomic data in biological databases. Ochrobactrum species are known for their environmental versatility, often found in diverse habitats such as soil and water. They are recognized for their ability to degrade various organic compounds, which suggests potential applications in bioremediation and environmental management. The presence of only one replicon in Ochrobactrum sp. POC9 may imply a simplified genetic regulation compared to other species with multiple replicons, possibly making it easier for the organism to adapt to environmental changes or stresses. The ecological role of Ochrobactrum sp. POC9 could be significant, as members of this genus are often involved in nutrient cycling and the degradation of pollutants. Understanding its genomic features and capabilities could provide insights into its environmental interactions and potential uses in biotechnology. The streamlined genomic architecture may enhance its adaptability, allowing it to thrive in various ecological niches while contributing to ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum sp. POC9
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum sp. POC9 Ochrobactrum_sp._POC9_contig00255, whole

Gene Summary

Adenine Count

1095183 bp

Thymine Count

1106608 bp

Guanine Count

1395064 bp

Cytosine Count

1372720 bp

Genome Length

4969575 bp

Protein-coding Genes

4657 genes

Non-Coding Genes

149 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseDK867_16440Not AvailableNegative3383450 - 338439433963.6
abc transporter substrate-binding proteinDK867_16445Not AvailableNegative3384493 - 338560840934.6
polyamine abc transporter atp-binding proteinDK867_16450Not AvailableNegative3385646 - 338678240993.3
2-deoxy-d-gluconate 3-dehydrogenaseDK867_16455Not AvailableNegative3386876 - 338764926408.4
histidinol-phosphate transaminaseDK867_16460Not AvailablePositive3387866 - 338899040944.2
dna oxidative demethylase alkbDK867_16465Not AvailablePositive3389045 - 338968323484.9
l-rhamnose catabolism isomeraseDK867_16470Not AvailableNegative3389788 - 339108047638.8
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenaseDK867_16475Not AvailableNegative3391111 - 339320775981.5
deor family transcriptional regulatorDK867_16480Not AvailablePositive3393420 - 339424430167.4
rhamnose abc transporter substrate-binding proteinDK867_16485Not AvailablePositive3394291 - 339528634443.3

Displaying genes 3251 – 3260 of 4806 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.