Ochrobactrum sp. POC9

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum sp. POC9 is characterized by a single replicon, indicating a streamlined genomic structure. This bacterium has been cataloged under the accession number QGST00000000.1, which serves as a unique identifier for its genomic data in biological databases. Ochrobactrum species are known for their environmental versatility, often found in diverse habitats such as soil and water. They are recognized for their ability to degrade various organic compounds, which suggests potential applications in bioremediation and environmental management. The presence of only one replicon in Ochrobactrum sp. POC9 may imply a simplified genetic regulation compared to other species with multiple replicons, possibly making it easier for the organism to adapt to environmental changes or stresses. The ecological role of Ochrobactrum sp. POC9 could be significant, as members of this genus are often involved in nutrient cycling and the degradation of pollutants. Understanding its genomic features and capabilities could provide insights into its environmental interactions and potential uses in biotechnology. The streamlined genomic architecture may enhance its adaptability, allowing it to thrive in various ecological niches while contributing to ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum sp. POC9
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum sp. POC9 Ochrobactrum_sp._POC9_contig00255, whole

Gene Summary

Adenine Count

1095183 bp

Thymine Count

1106608 bp

Guanine Count

1395064 bp

Cytosine Count

1372720 bp

Genome Length

4969575 bp

Protein-coding Genes

4657 genes

Non-Coding Genes

149 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
twin transmembrane helix small proteinDK867_15455Not AvailableNegative3203633 - 32038367384.56
short-chain dehydrogenaseDK867_15460Not AvailableNegative3203870 - 320472431295.8
ribonuclease bnDK867_15465Not AvailablePositive3204889 - 320574931571.3
eama family transporterDK867_15470Not AvailableNegative3205797 - 320665730111.0
yaii/yqxd family proteinDK867_15475Not AvailablePositive3206774 - 320725917188.6
lysine transporter lyseDK867_15480Not AvailableNegative3207251 - 320787122178.7
sodium:dicarboxylate symporterDK867_15485Not AvailableNegative3207929 - 320862724466.3
argininosuccinate lyaseDK867_15490Not AvailablePositive3208682 - 321008251431.8
hypothetical proteinDK867_15495Not AvailablePositive3210194 - 32103766276.83
diaminopimelate decarboxylaseDK867_15500Not AvailablePositive3210398 - 321166345658.9

Displaying genes 3061 – 3070 of 4806 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.