Ochrobactrum sp. POC9

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum sp. POC9 is characterized by a single replicon, indicating a streamlined genomic structure. This bacterium has been cataloged under the accession number QGST00000000.1, which serves as a unique identifier for its genomic data in biological databases. Ochrobactrum species are known for their environmental versatility, often found in diverse habitats such as soil and water. They are recognized for their ability to degrade various organic compounds, which suggests potential applications in bioremediation and environmental management. The presence of only one replicon in Ochrobactrum sp. POC9 may imply a simplified genetic regulation compared to other species with multiple replicons, possibly making it easier for the organism to adapt to environmental changes or stresses. The ecological role of Ochrobactrum sp. POC9 could be significant, as members of this genus are often involved in nutrient cycling and the degradation of pollutants. Understanding its genomic features and capabilities could provide insights into its environmental interactions and potential uses in biotechnology. The streamlined genomic architecture may enhance its adaptability, allowing it to thrive in various ecological niches while contributing to ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum sp. POC9
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum sp. POC9 Ochrobactrum_sp._POC9_contig00255, whole

Gene Summary

Adenine Count

1095183 bp

Thymine Count

1106608 bp

Guanine Count

1395064 bp

Cytosine Count

1372720 bp

Genome Length

4969575 bp

Protein-coding Genes

4657 genes

Non-Coding Genes

149 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-aminocyclopropane-1-carboxylate deaminaseDK867_10420Not AvailablePositive2195266 - 219642942587.8
ribonuclease e/gDK867_10425Not AvailableNegative2196516 - 2199290103549.0
hypothetical proteinDK867_10430Not AvailablePositive2199293 - 21994786431.98
n-acetylmuramoyl-l-alanine amidaseDK867_10435Not AvailablePositive2200015 - 220125045423.4
penicillin-binding proteinDK867_10440Not AvailablePositive2201515 - 220397489680.4
peptide chain release factor 2DK867_10445Not AvailablePositive2204129 - 220525742412.8
m23 family peptidaseDK867_10450Not AvailableNegative2205327 - 220667948392.0
duf455 domain-containing proteinDK867_10455Not AvailableNegative2206807 - 220763431047.5
thioredoxin-dependent thiol peroxidaseDK867_10460Not AvailableNegative2207638 - 220810217063.4
rna-binding proteinDK867_10465Not AvailablePositive2208390 - 2211788119957.0

Displaying genes 2121 – 2130 of 4806 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.