Leucothrix arctica strain IMCC9719

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Leucothrix

Description

Leucothrix arctica strain IMCC9719 is characterized by a single replicon, indicating a streamlined genetic structure. This strain is cataloged under the accession number QGKL00000000.1, which provides a reference for genetic and genomic studies. Leucothrix species are typically found in aquatic environments, where they play significant roles in microbial communities. They are known for their filamentous morphology, which may contribute to their ecological functions such as nutrient cycling and biofilm formation. While specific ecological interactions and environmental conditions associated with strain IMCC9719 are not detailed, the presence of Leucothrix arctica in marine habitats generally suggests its involvement in the degradation of organic matter and possible contributions to the food web. In summary, Leucothrix arctica strain IMCC9719, with its single replicon and genetic reference, exemplifies the diversity and ecological significance of filamentous bacteria in aquatic ecosystems. Understanding the traits and behaviors of such strains can provide insights into microbial dynamics and their environmental roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusLeucothrix
SpeciesLeucothrix arctica
Strainstrain IMCC9719

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leucothrix arctica strain IMCC9719 IMCC9719_contig44, whole genome

Gene Summary

Adenine Count

1343496 bp

Thymine Count

1343111 bp

Guanine Count

1034260 bp

Cytosine Count

1031737 bp

Genome Length

4752604 bp

Protein-coding Genes

4211 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Ncrna_class:otherNot AvailableNot AvailablePositive18799 - 18977Not Available
abc transporter permeaseDKT75_00105Not AvailablePositive19713 - 2065434403.7
methionine abc transporter atp-binding proteinDKT75_00110Not AvailablePositive20659 - 2164536058.2
abc transporter atp-binding proteinDKT75_00115Not AvailablePositive21642 - 2265537458.2
lysr family transcriptional regulatorDKT75_00120Not AvailablePositive22753 - 2367035483.5
xaa-pro dipeptidaseDKT75_00125Not AvailablePositive23729 - 2504249339.2
branched chain amino acid aminotransferaseDKT75_00130Not AvailableNegative25135 - 2613336427.4
hypothetical proteinDKT75_00135Not AvailableNegative26207 - 2673719808.0
cold-shock proteinDKT75_00140Not AvailablePositive27066 - 272757551.83
hypothetical proteinDKT75_00145Not AvailableNegative27403 - 2799621558.2

Displaying genes 21 – 30 of 4272 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

290 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 290 metabolites

Health Effects

No health effects information available for this bacterium.