Vibrio albus strain E4404

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio albus strain E4404 is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QFWT00000000.1, which serves as a reference for its genomic data. Vibrio albus is a member of the Vibrio genus, which is known for its presence in marine environments. The ecological role of Vibrio species often includes participation in nutrient cycling and interactions with both macro and microorganisms. The single replicon characteristic may suggest a particular evolutionary strategy that allows V. albus to thrive in specific ecological niches or under varying environmental conditions. This trait can influence the organism’s metabolic capabilities and its interactions within microbial communities. Understanding the genomic features of Vibrio albus strain E4404 can provide insights into its potential applications in biotechnology or environmental microbiology, particularly in marine ecosystems. The simplicity of having one replicon might facilitate genetic studies aimed at exploring the strain's role in biogeochemical cycles or its interactions with marine life. Overall, the traits associated with Vibrio albus strain E4404 highlight its significance within the broader ecological context of marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio albus
Strainstrain E4404

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio albus strain E4404
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio albus strain E4404 contig37_1, whole genome shotgun

Gene Summary

Adenine Count

1157557 bp

Thymine Count

1142441 bp

Guanine Count

957465 bp

Cytosine Count

1007833 bp

Genome Length

4265296 bp

Protein-coding Genes

3666 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferaseDI392_05705Not AvailableNegative1262307 - 126417264607.1
pyruvate dehydrogenase (acetyl-transferring), homodimeric typeDI392_05710Not AvailableNegative1264199 - 1266871100154.0
pyruvate dehydrogenase complex transcriptional repressor pdhrDI392_05715Not AvailableNegative1266944 - 126771429313.2
carboxylating nicotinate-nucleotide diphosphorylaseDI392_05720Not AvailableNegative1268107 - 126899432165.4
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdDI392_05725Not AvailablePositive1269222 - 126977020828.7
rna polymerase sigma factor rposDI392_05730Not AvailableNegative1269771 - 127075137454.9
hypothetical proteinDI392_05735Not AvailableNegative1270826 - 127177034032.5
protein-l-isoaspartate o-methyltransferaseDI392_05740Not AvailableNegative1271806 - 127243223029.7
5'/3'-nucleotidase sureDI392_05745Not AvailableNegative1272435 - 127317826922.1
trna pseudouridine(13) synthase trudDI392_05750Not AvailableNegative1273207 - 127425939460.0

Displaying genes 1141 – 1150 of 3788 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.