Escherichia coli strain NGE-016

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NGE-016 is a Gram-negative, rod-shaped bacterium that exhibits mobility, characterized by the presence of flagella. This strain is a facultative anaerobe, thriving optimally at 37°C within a mesophilic temperature range. It is biotic, demonstrating a free-living relationship and can be found in various habitats associated with multiple hosts, including mammals such as Homo sapiens, Bos taurus, and Canis lupus familiaris, as well as other organisms like Solanum lycopersicum and Apis mellifera. NGE-016 is notable for its pathogenic potential in humans, being implicated in a wide array of health effects. These include urinary tract infections (UTIs), gastrointestinal infections, peritonitis, and severe conditions such as hemolytic uremic syndrome (HUS) and neonatal meningitis. The strain is also associated with foodborne infections, which can lead to complications like renal failure and diarrhea. Its pathogenicity underscores the importance of this strain in both clinical and public health contexts. Given its diverse host range and the spectrum of diseases it can cause, E. coli strain NGE-016 serves as a critical pathogen in health and disease dynamics. Its presence in various environments and potential for causing infections highlight the ecological significance of this strain in both human and animal health, emphasizing the need for continued surveillance and research to understand its impact on health and disease transmission.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain NGE-016

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain NGE-016
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NGE-016 NODE_305_length_212_cov_6.67059,

Gene Summary

Adenine Count

1223980 bp

Thymine Count

1220313 bp

Guanine Count

1256252 bp

Cytosine Count

1252374 bp

Genome Length

4952920 bp

Protein-coding Genes

4684 genes

Non-Coding Genes

368 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Recombinase family proteinDIZ31_05570Not AvailablePositive1097167 - 109773921638.7
AttrNot AvailableNot AvailablePositive1112608 - 1112622Not Available
AttlNot AvailableNot AvailablePositive2012400 - 2012412Not Available
Dna replication proteinDIZ31_10220Not AvailableNegative2014679 - 201538026576.1
Replication protein oDIZ31_10225Not AvailableNegative2015377 - 201639637598.8
Cii decision making proteinDIZ31_10230Not AvailableNegative2016393 - 201693220159.2
Helix-turn-helix domain-containing proteinDIZ31_10235Not AvailableNegative2017002 - 20172328150.94
Repressor proteinDIZ31_10240Not AvailablePositive2017271 - 201802628165.8
Kil proteinDIZ31_10245Not AvailablePositive2018622 - 20188287717.32
hypotheticalDIZ31_10250Not AvailablePositive2018830 - 20189072613.12

Displaying genes 81 – 90 of 5052 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total