Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase-n subunit alpha | DIZ31_16425 | Not Available | Positive | 3232029 - 3234443 | 89602.2 |
| formate dehydrogenase-o iron-sulfur subunit | DIZ31_16430 | Not Available | Positive | 3234456 - 3235358 | 33087.1 |
| formate dehydrogenase cytochrome b556(fdo) subunit | DIZ31_16435 | Not Available | Positive | 3235355 - 3235990 | 24607.7 |
| formate dehydrogenase accessory protein fdhe | DIZ31_16440 | Not Available | Positive | 3235987 - 3236916 | 34743.6 |
| hypothetical protein | DIZ31_16445 | Not Available | Negative | 3237098 - 3237316 | 8443.05 |
| hypothetical protein | DIZ31_16450 | Not Available | Positive | 3237630 - 3238478 | 33325.5 |
| hypothetical protein | DIZ31_16455 | Not Available | Positive | 3238794 - 3239243 | 17456.6 |
| ribbon-helix-helix protein, copg family | DIZ31_16460 | Not Available | Negative | 3239428 - 3239640 | 8362.02 |
| hypothetical protein | DIZ31_16470 | Not Available | Negative | 3240043 - 3240321 | 11130.1 |
| hypothetical protein | DIZ31_16475 | Not Available | Negative | 3240383 - 3240595 | 8267.17 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





