Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | DIZ31_16220 | Not Available | Negative | 3194814 - 3195356 | 20328.4 |
| formate hydrogenlyase subunit 5 | DIZ31_16225 | Not Available | Negative | 3195366 - 3197075 | 64970.1 |
| hydrogenase 3 membrane subunit | DIZ31_16230 | Not Available | Negative | 3197093 - 3198016 | 33059.4 |
| formate hydrogenlyase subunit 3 | DIZ31_16235 | Not Available | Negative | 3198019 - 3199845 | 64129.2 |
| 4fe-4s dicluster domain-containing protein | DIZ31_16240 | Not Available | Negative | 3199842 - 3200453 | 21906.4 |
| formate hydrogenlyase regulator hyca | DIZ31_16245 | Not Available | Negative | 3200578 - 3201039 | 17656.0 |
| protein hypa | DIZ31_16250 | Not Available | Positive | 3201251 - 3201601 | 13168.9 |
| hydrogenase isoenzymes nickel incorporation protein hypb | DIZ31_16255 | Not Available | Positive | 3201605 - 3202477 | 31566.8 |
| hydrogenase assembly protein hypc | DIZ31_16260 | Not Available | Positive | 3202468 - 3202740 | 9732.58 |
| hydrogenase formation protein hypd | DIZ31_16265 | Not Available | Positive | 3202740 - 3203861 | 41366.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





