Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | DIZ31_16165 | Not Available | Negative | 3188861 - 3189886 | 39213.0 |
| duf4224 domain-containing protein | DIZ31_16170 | Not Available | Negative | 3189886 - 3190089 | 7675.36 |
| hypothetical protein | DIZ31_16175 | Not Available | Negative | 3190148 - 3190315 | 6307.4 |
| carbamoyltransferase hypf | DIZ31_16180 | Not Available | Negative | 3190316 - 3190888 | 21514.9 |
| electron transporter hydn | DIZ31_16185 | Not Available | Negative | 3191041 - 3191568 | 19027.2 |
| hypothetical protein | DIZ31_16195 | Not Available | Positive | 3191996 - 3192433 | 16611.5 |
| helix-turn-helix domain-containing protein | DIZ31_16200 | Not Available | Negative | 3192525 - 3192944 | 15417.2 |
| hydrogenase maturation peptidase hyci | DIZ31_16205 | Not Available | Negative | 3193180 - 3193647 | 16884.4 |
| formate hydrogenlyase maturation protein hych | DIZ31_16210 | Not Available | Negative | 3193640 - 3194050 | 15451.5 |
| nadh-quinone oxidoreductase subunit nuob | DIZ31_16215 | Not Available | Negative | 3194047 - 3194814 | 28025.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





