Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1161 domain-containing protein | DIZ31_15845 | Not Available | Negative | 3117799 - 3118104 | 10605.3 |
| ynfc family lipoprotein | DIZ31_15850 | Not Available | Positive | 3118212 - 3118922 | 26515.3 |
| spermidine n1-acetyltransferase | DIZ31_15855 | Not Available | Negative | 3118925 - 3119485 | 21902.3 |
| duf1283 domain-containing protein | DIZ31_15860 | Not Available | Negative | 3119520 - 3119861 | 13002.5 |
| ynfa family protein | DIZ31_15865 | Not Available | Positive | 3119996 - 3120322 | 11920.2 |
| hypothetical protein | DIZ31_15870 | Not Available | Positive | 3120359 - 3120547 | 7332.84 |
| starvation-sensing protein rspa | DIZ31_15875 | Not Available | Positive | 3120528 - 3121742 | 45985.0 |
| zn-dependent oxidoreductase | DIZ31_15880 | Not Available | Positive | 3121754 - 3122773 | 36582.1 |
| mfs transporter | DIZ31_15885 | Not Available | Positive | 3122831 - 3124198 | 49350.7 |
| mannitol dehydrogenase family protein | DIZ31_15890 | Not Available | Positive | 3124287 - 3125747 | 53817.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





