Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybjn domain-containing protein | DIZ31_14865 | Not Available | Positive | 2904710 - 2905186 | 17667.1 |
| spermidine/putrescine abc transporter substrate-binding protein potf | DIZ31_14875 | Not Available | Positive | 2905536 - 2906648 | 40869.8 |
| polyamine abc transporter atp-binding protein | DIZ31_14880 | Not Available | Positive | 2906743 - 2907876 | 41981.4 |
| putrescine abc transporter permease poth | DIZ31_14885 | Not Available | Positive | 2907886 - 2908830 | 35352.5 |
| putrescine abc transporter permease poti | DIZ31_14890 | Not Available | Positive | 2908827 - 2909672 | 30556.4 |
| duf2593 domain-containing protein | DIZ31_14895 | Not Available | Positive | 2909732 - 2910220 | 18519.1 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | DIZ31_14900 | Not Available | Positive | 2910261 - 2911388 | 41959.1 |
| arginine/ornithine abc transporter substrate-binding protein | DIZ31_14905 | Not Available | Negative | 2911417 - 2912148 | 26857.9 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DIZ31_14910 | Not Available | Negative | 2912245 - 2912379 | 5163.0 |
| outer membrane protein assembly factor bamc | DIZ31_14915 | Not Available | Negative | 2912592 - 2913626 | 36867.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





