Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-di-gmp phosphodiesterase | DIZ31_14765 | Not Available | Positive | 2884732 - 2887080 | 90049.6 |
| ggdef domain-containing protein | DIZ31_14770 | Not Available | Positive | 2887088 - 2888416 | 49861.7 |
| 30s ribosomal protein s12 methylthiotransferase rimo | DIZ31_14775 | Not Available | Negative | 2888463 - 2889788 | 49584.6 |
| biofilm regulator bssr | DIZ31_14780 | Not Available | Positive | 2890001 - 2890384 | 14536.6 |
| pqq-dependent sugar dehydrogenase | DIZ31_14785 | Not Available | Positive | 2890495 - 2891610 | 41087.9 |
| glutathione s-transferase | DIZ31_14790 | Not Available | Negative | 2891607 - 2892233 | 23744.5 |
| d-alanyl-d-alanine carboxypeptidase | DIZ31_14795 | Not Available | Positive | 2892480 - 2893682 | 43643.4 |
| deor family transcriptional regulator | DIZ31_14800 | Not Available | Negative | 2893729 - 2894487 | 28563.6 |
| undecaprenyl-diphosphate phosphatase | DIZ31_14805 | Not Available | Negative | 2894545 - 2895141 | 22462.9 |
| multidrug transporter mdfa | DIZ31_14810 | Not Available | Positive | 2895426 - 2896658 | 44323.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





