Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hemolysin iii family protein | DIZ31_14090 | Not Available | Negative | 2755518 - 2756177 | 23876.3 |
| cytochrome bd-ii oxidase subunit 1 | DIZ31_14095 | Not Available | Negative | 2756292 - 2757712 | 53482.6 |
| hydrogenase expression/formation protein | DIZ31_14100 | Not Available | Negative | 2757846 - 2758703 | 31346.4 |
| hydrogenase-1 operon protein hyae | DIZ31_14105 | Not Available | Negative | 2758700 - 2759098 | 14950.7 |
| hydrogenase 1 maturation protease | DIZ31_14110 | Not Available | Negative | 2759095 - 2759682 | 21498.7 |
| ni/fe-hydrogenase, b-type cytochrome subunit | DIZ31_14115 | Not Available | Negative | 2759679 - 2760386 | 27612.9 |
| hydrogenase 1 large subunit | DIZ31_14120 | Not Available | Negative | 2760405 - 2762198 | 66297.2 |
| [ni/fe] hydrogenase small subunit | DIZ31_14125 | Not Available | Negative | 2762195 - 2763313 | 40653.5 |
| Trna-ser | Not Available | Not Available | Positive | 2763741 - 2763828 | Not Available |
| bax inhibitor protein | DIZ31_14135 | Not Available | Positive | 2764037 - 2764696 | 23364.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





