Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna dihydrouridine(16) synthase dusc | DIZ31_13310 | Not Available | Negative | 2615981 - 2616931 | 35357.7 |
| hypothetical protein | DIZ31_13315 | Not Available | Positive | 2617170 - 2617568 | 14579.6 |
| cidb/lrgb family autolysis modulator | DIZ31_13320 | Not Available | Positive | 2617565 - 2618260 | 24471.1 |
| cytidine deaminase | DIZ31_13325 | Not Available | Positive | 2618390 - 2619274 | 31568.6 |
| protein sana | DIZ31_13330 | Not Available | Positive | 2619424 - 2620143 | 27288.5 |
| duf2542 domain-containing protein | DIZ31_13335 | Not Available | Positive | 2620146 - 2620385 | 9264.61 |
| nad(p)-dependent oxidoreductase | DIZ31_13340 | Not Available | Positive | 2620579 - 2621817 | 44212.9 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | DIZ31_13345 | Not Available | Positive | 2621811 - 2623046 | 45077.4 |
| galactose/methyl galactoside abc transporter permease mglc | DIZ31_13350 | Not Available | Negative | 2623289 - 2624299 | 35594.5 |
| galactose/methyl galactoside import atp-binding protein mgla | DIZ31_13355 | Not Available | Negative | 2624315 - 2625835 | 56391.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





