Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic diguanylate phosphodiesterase | DIZ31_12925 | Not Available | Positive | 2540284 - 2541882 | 59577.7 |
| terc family protein | DIZ31_12930 | Not Available | Negative | 2541886 - 2543442 | 56531.5 |
| hypothetical protein | DIZ31_12935 | Not Available | Negative | 2543430 - 2543639 | 8020.69 |
| pts mannose transporter subunit iiab | DIZ31_12945 | Not Available | Positive | 2543906 - 2544877 | 35091.6 |
| pts mannose/fructose/sorbose transporter subunit iic | DIZ31_12950 | Not Available | Positive | 2544940 - 2545740 | 27637.6 |
| pts mannose transporter subunit iid | DIZ31_12955 | Not Available | Positive | 2545753 - 2546604 | 30957.4 |
| duf986 domain-containing protein | DIZ31_12960 | Not Available | Positive | 2546659 - 2547117 | 17616.4 |
| 23s rrna (guanine(745)-n(1))-methyltransferase | DIZ31_12975 | Not Available | Negative | 2548109 - 2548918 | 30547.8 |
| cold-shock protein cspc | DIZ31_12980 | Not Available | Negative | 2549084 - 2549293 | 7402.76 |
| duf2627 domain-containing protein | DIZ31_12985 | Not Available | Negative | 2549306 - 2549449 | 5212.44 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





