Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DIZ31_12280 | Not Available | Negative | 2404670 - 2404948 | 10749.5 |
| hypothetical protein | DIZ31_12285 | Not Available | Negative | 2404945 - 2405523 | 20989.8 |
| hypothetical protein | DIZ31_12290 | Not Available | Negative | 2406225 - 2408132 | 70458.6 |
| allose kinase | DIZ31_12295 | Not Available | Negative | 2408405 - 2409334 | 33809.8 |
| ribulose-phosphate 3-epimerase | DIZ31_12300 | Not Available | Negative | 2409318 - 2410013 | 26081.7 |
| allose abc transporter | DIZ31_12305 | Not Available | Negative | 2410024 - 2411004 | 34303.8 |
| d-allose abc transporter atp-binding protein alsa | DIZ31_12310 | Not Available | Negative | 2410983 - 2412515 | 56832.4 |
| allose abc transporter | DIZ31_12315 | Not Available | Negative | 2412643 - 2413578 | 32927.7 |
| murr/rpir family transcriptional regulator | DIZ31_12320 | Not Available | Negative | 2413637 - 2414527 | 32364.1 |
| ribose 5-phosphate isomerase b | DIZ31_12330 | Not Available | Positive | 2414886 - 2415335 | 16046.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





