Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter outer membrane beta-barrel domain-containing protein | DIZ31_12165 | Not Available | Negative | 2390742 - 2391329 | 21505.9 |
| porin | DIZ31_12170 | Not Available | Negative | 2391415 - 2391777 | 13069.0 |
| porin | DIZ31_12175 | Not Available | Negative | 2391801 - 2392064 | 9054.36 |
| hypothetical protein | DIZ31_12190 | Not Available | Negative | 2392646 - 2392864 | 8237.33 |
| hypothetical protein | DIZ31_12200 | Not Available | Negative | 2394187 - 2394435 | 9638.77 |
| regulatory protein arir | DIZ31_12205 | Not Available | Negative | 2394548 - 2394814 | 9696.56 |
| two-component-system connector protein ymga | DIZ31_12210 | Not Available | Negative | 2394843 - 2395115 | 10345.5 |
| two-component-system connector protein ycgz | DIZ31_12215 | Not Available | Negative | 2395158 - 2395394 | 8694.37 |
| diguanylate phosphodiesterase | DIZ31_12220 | Not Available | Positive | 2395708 - 2396919 | 45304.6 |
| helix-turn-helix-type transcriptional regulator | DIZ31_12225 | Not Available | Positive | 2397124 - 2397855 | 28304.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





