Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flap endonuclease xni | DIZ31_11690 | Not Available | Negative | 2295852 - 2296607 | 28136.7 |
| l-serine ammonia-lyase | DIZ31_11695 | Not Available | Negative | 2296719 - 2298086 | 48725.8 |
| haaap family serine/threonine permease | DIZ31_11700 | Not Available | Negative | 2298144 - 2299433 | 46923.3 |
| log family protein ygdh | DIZ31_11705 | Not Available | Negative | 2299990 - 2301354 | 50975.0 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DIZ31_11710 | Not Available | Negative | 2301466 - 2302314 | 32573.2 |
| protein syd | DIZ31_11715 | Not Available | Positive | 2302382 - 2302927 | 20737.6 |
| hypothetical protein | DIZ31_11720 | Not Available | Positive | 2303549 - 2303878 | 12773.2 |
| trna pseudouridine(65) synthase truc | DIZ31_11725 | Not Available | Positive | 2303878 - 2304660 | 29637.4 |
| flavodoxin | DIZ31_11730 | Not Available | Positive | 2304678 - 2305127 | 16316.2 |
| mfs transporter | DIZ31_11735 | Not Available | Positive | 2305561 - 2306913 | 49145.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





