Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent dna ligase liga | DIZ31_11435 | Not Available | Positive | 2249717 - 2251732 | 73631.3 |
| hypothetical protein | DIZ31_11440 | Not Available | Positive | 2251734 - 2251952 | 8427.63 |
| bile acid:sodium symporter | DIZ31_11445 | Not Available | Negative | 2251949 - 2252947 | 36377.8 |
| lysr family transcriptional regulator | DIZ31_11450 | Not Available | Positive | 2253037 - 2253963 | 33905.1 |
| hypothetical protein | DIZ31_11455 | Not Available | Negative | 2254002 - 2254766 | 29238.6 |
| xanthosine phosphorylase | DIZ31_11460 | Not Available | Positive | 2255015 - 2255848 | 29892.5 |
| nucleoside permease | DIZ31_11465 | Not Available | Positive | 2255909 - 2257165 | 46150.4 |
| xapx domain-containing protein | DIZ31_11470 | Not Available | Positive | 2257218 - 2257376 | 5691.39 |
| lysr family transcriptional regulator | DIZ31_11475 | Not Available | Positive | 2257417 - 2258301 | 33582.3 |
| Trna-lys | Not Available | Not Available | Positive | 2258412 - 2258487 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





