Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit a | DIZ31_10875 | Not Available | Negative | 2137489 - 2139747 | 83869.5 |
| abc transporter substrate-binding protein | DIZ31_10880 | Not Available | Negative | 2139885 - 2141492 | 60738.2 |
| arac family transcriptional regulator | DIZ31_10885 | Not Available | Negative | 2141601 - 2142083 | 17890.4 |
| tigr00156 family protein | DIZ31_10890 | Not Available | Negative | 2142136 - 2142528 | 14011.5 |
| two-component system response regulator qseb | DIZ31_10895 | Not Available | Positive | 2142680 - 2143339 | 24557.0 |
| two-component system sensor histidine kinase qsec | DIZ31_10900 | Not Available | Positive | 2143336 - 2144685 | 50132.5 |
| duf2645 domain-containing protein | DIZ31_10905 | Not Available | Negative | 2144731 - 2145063 | 13244.7 |
| hypothetical protein | DIZ31_10910 | Not Available | Negative | 2145070 - 2145780 | 27503.3 |
| type vi secretion system tube protein hcp | DIZ31_10915 | Not Available | Negative | 2145783 - 2146253 | 17885.2 |
| membrane transport protein | DIZ31_10920 | Not Available | Negative | 2146495 - 2147775 | 44746.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





