Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiouridine(34) synthase mnma | DIZ31_10325 | Not Available | Positive | 2026394 - 2027500 | 40961.7 |
| lysogenization protein hfld | DIZ31_10330 | Not Available | Positive | 2027536 - 2028177 | 22935.0 |
| adenylosuccinate lyase | DIZ31_10335 | Not Available | Positive | 2028181 - 2029551 | 51526.6 |
| two-component system response regulator phop | DIZ31_10340 | Not Available | Positive | 2029720 - 2030391 | 25536.7 |
| two-component system sensor histidine kinase phoq | DIZ31_10345 | Not Available | Positive | 2030391 - 2031851 | 55330.9 |
| 50s ribosomal protein l16 arginine hydroxylase | DIZ31_10350 | Not Available | Positive | 2031927 - 2033048 | 42567.2 |
| peptidase t | DIZ31_10355 | Not Available | Negative | 2033097 - 2034323 | 44912.0 |
| hypothetical protein | DIZ31_10360 | Not Available | Positive | 2034379 - 2034594 | 8394.19 |
| fe3+/spermidine/putrescine abc transporter atp-binding protein | DIZ31_10365 | Not Available | Positive | 2034573 - 2035709 | 43030.8 |
| spermidine/putrescine abc transporter permease potb | DIZ31_10370 | Not Available | Positive | 2035693 - 2036550 | 32224.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





