Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactose-proton symporter | DIZ31_09580 | Not Available | Negative | 1894068 - 1895462 | 50985.6 |
| s-adenosylmethionine synthase | DIZ31_09585 | Not Available | Negative | 1895898 - 1897052 | 41954.0 |
| duf2684 domain-containing protein | DIZ31_09590 | Not Available | Positive | 1897108 - 1897359 | 9534.78 |
| hypothetical protein | DIZ31_09595 | Not Available | Negative | 1897356 - 1897571 | 8148.99 |
| virulence promoting factor | DIZ31_09600 | Not Available | Positive | 1897707 - 1897838 | 4859.08 |
| arginine decarboxylase | DIZ31_09605 | Not Available | Positive | 1897847 - 1899823 | 73890.6 |
| hypothetical protein | DIZ31_09610 | Not Available | Positive | 1899969 - 1900700 | 26324.7 |
| agmatinase | DIZ31_09615 | Not Available | Positive | 1900836 - 1901756 | 33572.9 |
| metalloprotease | DIZ31_09620 | Not Available | Negative | 1902186 - 1902944 | 26862.9 |
| transketolase | DIZ31_09625 | Not Available | Positive | 1903222 - 1905213 | 72172.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





