Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE-016 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1223980 bp
Thymine Count
1220313 bp
Guanine Count
1256252 bp
Cytosine Count
1252374 bp
Genome Length
4952920 bp
Protein-coding Genes
4684 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DIZ31_09220 | Not Available | Negative | 1833056 - 1833238 | 6799.15 |
| pp_01824 | DIZ31_09225 | Not Available | Positive | 1833345 - 1833677 | Not Available |
| putrescine aminotransferase | DIZ31_09230 | Not Available | Negative | 1833719 - 1835098 | 49634.2 |
| hypothetical protein | DIZ31_09235 | Not Available | Negative | 1835034 - 1835240 | 7711.06 |
| pas domain s-box protein | DIZ31_09240 | Not Available | Positive | 1835516 - 1837036 | 55039.9 |
| padr family transcriptional regulator | DIZ31_09245 | Not Available | Negative | 1837143 - 1837766 | 23363.7 |
| siderophore-interacting protein | DIZ31_09255 | Not Available | Positive | 1838054 - 1838818 | 28893.1 |
| Trna-met | Not Available | Not Available | Positive | 1838872 - 1838947 | Not Available |
| mismatch-specific dna-glycosylase | DIZ31_09265 | Not Available | Positive | 1839072 - 1839578 | 18674.5 |
| rna polymerase sigma factor rpod | DIZ31_09270 | Not Available | Negative | 1839656 - 1841497 | 70239.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





