Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain E-9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1050001 bp
Thymine Count
1052755 bp
Guanine Count
1075150 bp
Cytosine Count
1076456 bp
Genome Length
4254362 bp
Protein-coding Genes
4037 genes
Non-Coding Genes
203 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yopn family type iii secretion system gatekeeper subunit | DIZ28_15565 | Not Available | Positive | 3137094 - 3138239 | 43548.6 |
| flii/yscn family atpase | DIZ28_15585 | Not Available | Positive | 3141073 - 3142392 | 48549.6 |
| type iii secretion protein | DIZ28_15590 | Not Available | Positive | 3142373 - 3142840 | 18646.7 |
| effector protein | DIZ28_15600 | Not Available | Positive | 3143076 - 3143693 | 23881.1 |
| yscq/hrcq family type iii secretion apparatus protein | DIZ28_15605 | Not Available | Positive | 3143693 - 3144640 | 36349.6 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | DIZ28_15610 | Not Available | Positive | 3144630 - 3145295 | 24496.4 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | DIZ28_15615 | Not Available | Positive | 3145305 - 3145565 | 9430.85 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | DIZ28_15620 | Not Available | Positive | 3145567 - 3146334 | 28182.7 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | DIZ28_15625 | Not Available | Positive | 3146343 - 3147455 | 43024.9 |
| invasion protein | DIZ28_15630 | Not Available | Negative | 3147526 - 3147819 | 11102.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





