Rhodanobacter denitrificans

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter denitrificans is a Gram-negative bacterium characterized by its rod-shaped morphology. The organism possesses a single replicon, indicating a streamlined genetic structure. Its genetic information can be accessed through the accession number QFPO00000000.1, which provides a resource for further study and analysis. As a member of the Rhodanobacter genus, R. denitrificans is significant in various ecological contexts, particularly in its role in the nitrogen cycle. Denitrification is a crucial process where nitrate is reduced to nitrogen gas, thus contributing to the regulation of nitrogen availability in ecosystems. This function is vital for maintaining soil health and fertility, as well as for mitigating the effects of excess nitrates that can lead to environmental issues such as eutrophication. The specific traits of R. denitrificans, including its Gram-negative status and rod shape, suggest adaptations that may influence its ecological interactions and metabolic capabilities. Understanding these traits can provide insights into the organism's functionality within microbial communities and its potential applications in bioremediation or agricultural practices. Overall, R. denitrificans exemplifies the intricate relationships between microbial life and nutrient cycling in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodanobacter denitrificans isolate S2_005_003_R2_42

Gene Summary

Adenine Count

665630 bp

Thymine Count

660056 bp

Guanine Count

1539428 bp

Cytosine Count

1550579 bp

Genome Length

4415701 bp

Protein-coding Genes

3566 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxymethylglutaryl-coa lyaseDI564_00405Not AvailableNegative87648 - 8859233211.6
3-methylcrotonyl-coa carboxylaseDI564_00410Not AvailableNegative88601 - 9059871757.6
glyoxalase/bleomycin resistance/extradiol dioxygenase family proteinDI564_00415Not AvailableNegative90750 - 9114513477.6
enoyl-coa hydrataseDI564_00420Not AvailableNegative91149 - 9194327965.4
peptidaseDI564_00425Not AvailablePositive92122 - 9340846121.4
thiol oxidoreductaseDI564_00430Not AvailablePositive93441 - 9494954218.7
aminopeptidaseDI564_00435Not AvailablePositive94946 - 9603438529.8
duf1513 domain-containing proteinDI564_00440Not AvailablePositive96024 - 9712138197.3
duf3037 domain-containing proteinDI564_00445Not AvailableNegative97129 - 9753915339.7
aminotransferase class i and iiDI564_00450Not AvailableNegative97493 - 9827528352.9

Displaying genes 81 – 90 of 3610 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.