Rhodanobacter denitrificans

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter denitrificans is a Gram-negative bacterium characterized by its rod-shaped morphology. The organism possesses a single replicon, indicating a streamlined genetic structure. Its genetic information can be accessed through the accession number QFPO00000000.1, which provides a resource for further study and analysis. As a member of the Rhodanobacter genus, R. denitrificans is significant in various ecological contexts, particularly in its role in the nitrogen cycle. Denitrification is a crucial process where nitrate is reduced to nitrogen gas, thus contributing to the regulation of nitrogen availability in ecosystems. This function is vital for maintaining soil health and fertility, as well as for mitigating the effects of excess nitrates that can lead to environmental issues such as eutrophication. The specific traits of R. denitrificans, including its Gram-negative status and rod shape, suggest adaptations that may influence its ecological interactions and metabolic capabilities. Understanding these traits can provide insights into the organism's functionality within microbial communities and its potential applications in bioremediation or agricultural practices. Overall, R. denitrificans exemplifies the intricate relationships between microbial life and nutrient cycling in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodanobacter denitrificans isolate S2_005_003_R2_42

Gene Summary

Adenine Count

665630 bp

Thymine Count

660056 bp

Guanine Count

1539428 bp

Cytosine Count

1550579 bp

Genome Length

4415701 bp

Protein-coding Genes

3566 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDI564_11720Not AvailablePositive2806962 - 280778330078.5
adenylate/guanylate cyclase domain-containing proteinDI564_11725Not AvailableNegative2807849 - 280874532550.7
atp-dependent helicase hrpbDI564_11730Not AvailableNegative2808852 - 281134789088.8
duf3426 domain-containing proteinDI564_11735Not AvailableNegative2811403 - 281251840456.9
fad-dependent hydroxylaseDI564_11740Not AvailablePositive2812499 - 281368642033.8
hypothetical proteinDI564_11745Not AvailableNegative2813712 - 281424219750.4
50s ribosomal protein l11 methyltransferaseDI564_11750Not AvailableNegative2814337 - 281523332303.4
acetyl-coa carboxylase biotin carboxylase subunitDI564_11755Not AvailableNegative2815250 - 281661749159.4
acetyl-coa carboxylase biotin carboxyl carrier proteinDI564_11760Not AvailableNegative2816631 - 281709816024.5
type ii 3-dehydroquinate dehydrataseDI564_11765Not AvailableNegative2817143 - 281759215508.7

Displaying genes 2321 – 2330 of 3610 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.