Rhodanobacter denitrificans

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter denitrificans is a Gram-negative bacterium characterized by its rod-shaped morphology. The organism possesses a single replicon, indicating a streamlined genetic structure. Its genetic information can be accessed through the accession number QFPO00000000.1, which provides a resource for further study and analysis. As a member of the Rhodanobacter genus, R. denitrificans is significant in various ecological contexts, particularly in its role in the nitrogen cycle. Denitrification is a crucial process where nitrate is reduced to nitrogen gas, thus contributing to the regulation of nitrogen availability in ecosystems. This function is vital for maintaining soil health and fertility, as well as for mitigating the effects of excess nitrates that can lead to environmental issues such as eutrophication. The specific traits of R. denitrificans, including its Gram-negative status and rod shape, suggest adaptations that may influence its ecological interactions and metabolic capabilities. Understanding these traits can provide insights into the organism's functionality within microbial communities and its potential applications in bioremediation or agricultural practices. Overall, R. denitrificans exemplifies the intricate relationships between microbial life and nutrient cycling in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodanobacter denitrificans isolate S2_005_003_R2_42

Gene Summary

Adenine Count

665630 bp

Thymine Count

660056 bp

Guanine Count

1539428 bp

Cytosine Count

1550579 bp

Genome Length

4415701 bp

Protein-coding Genes

3566 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimerase galeDI564_11065Not AvailableNegative2656211 - 265719134944.7
hypothetical proteinDI564_11070Not AvailableNegative2657292 - 265857848308.4
polysaccharide biosynthesis proteinDI564_11075Not AvailableNegative2658679 - 265945527975.6
hypothetical proteinDI564_11080Not AvailableNegative2659452 - 266101158729.8
sugar abc transporter substrate-binding proteinDI564_11085Not AvailableNegative2661021 - 266162621641.2
capsular biosynthesis protein cpsiDI564_11090Not AvailableNegative2661805 - 266281237283.3
vi polysaccharide biosynthesis protein vipa/tvibDI564_11095Not AvailableNegative2662824 - 266411647189.5
drug/metabolite exporter yedaDI564_11100Not AvailablePositive2664517 - 266541330485.9
nadph-dependent fmn reductaseDI564_11105Not AvailableNegative2667580 - 266814020159.6
peptidylprolyl isomeraseDI564_11110Not AvailableNegative2668505 - 266898717203.3

Displaying genes 2191 – 2200 of 3610 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.