Rhodanobacter denitrificans

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter denitrificans is a Gram-negative bacterium characterized by its rod-shaped morphology. The organism possesses a single replicon, indicating a streamlined genetic structure. Its genetic information can be accessed through the accession number QFPO00000000.1, which provides a resource for further study and analysis. As a member of the Rhodanobacter genus, R. denitrificans is significant in various ecological contexts, particularly in its role in the nitrogen cycle. Denitrification is a crucial process where nitrate is reduced to nitrogen gas, thus contributing to the regulation of nitrogen availability in ecosystems. This function is vital for maintaining soil health and fertility, as well as for mitigating the effects of excess nitrates that can lead to environmental issues such as eutrophication. The specific traits of R. denitrificans, including its Gram-negative status and rod shape, suggest adaptations that may influence its ecological interactions and metabolic capabilities. Understanding these traits can provide insights into the organism's functionality within microbial communities and its potential applications in bioremediation or agricultural practices. Overall, R. denitrificans exemplifies the intricate relationships between microbial life and nutrient cycling in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodanobacter denitrificans isolate S2_005_003_R2_42

Gene Summary

Adenine Count

665630 bp

Thymine Count

660056 bp

Guanine Count

1539428 bp

Cytosine Count

1550579 bp

Genome Length

4415701 bp

Protein-coding Genes

3566 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdDI564_07325Not AvailablePositive1747915 - 174900637663.5
riboflavin synthaseDI564_07330Not AvailablePositive1749047 - 174965520963.1
3,4-dihydroxy-2-butanone-4-phosphate synthaseDI564_07335Not AvailablePositive1749652 - 175074039108.2
6,7-dimethyl-8-ribityllumazine synthaseDI564_07340Not AvailablePositive1750911 - 175137515877.1
transcription antitermination factor nusbDI564_07345Not AvailablePositive1751390 - 175183316778.0
thiamine-phosphate kinaseDI564_07350Not AvailablePositive1751869 - 175282532631.8
phosphatidylglycerophosphatase aDI564_07355Not AvailablePositive1752822 - 175331617690.8
hypothetical proteinDI564_07360Not AvailablePositive1753777 - 175424717085.4
hypothetical proteinDI564_07365Not AvailableNegative1754436 - 175507122471.5
fad-binding oxidoreductaseDI564_07370Not AvailableNegative1755423 - 175680247909.9

Displaying genes 1451 – 1460 of 3610 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.