Alcaligenes faecalis strain YBY

Gram-negativeRodAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Alcaligenes

Description

Alcaligenes faecalis strain YBY is a Gram-negative, aerobic rod bacterium predominantly found in fresh water, soil, and various hospital environments. This organism possesses flagella, enabling motility, which may facilitate its survival and spread in diverse ecological niches, including host-associated environments. Strain YBY has been implicated in a range of serious health effects, notably in humans. It is associated with various opportunistic infections, including bacteremia, pneumonia, urinary tract infections (UTIs), endocarditis, and skin and soft tissue infections, among others. These infections can lead to severe outcomes, including life-threatening conditions and death, particularly in individuals with compromised immune systems or underlying health issues. The bacterium has also been documented in association with several hosts, including Homo sapiens, Triticum aestivum (wheat), Mollusca, Withania somnifera (ashwagandha), and Plectranthus barbatus. This diverse host range suggests that Alcaligenes faecalis strain YBY may play a role in various ecological interactions, potentially affecting both human health and the health of plants and other organisms. Understanding the pathogenicity and ecological role of Alcaligenes faecalis strain YBY is critical, especially in healthcare settings where it can contribute to hospital-acquired infections. Its presence in both environmental and clinical samples underscores the importance of monitoring and managing this organism to mitigate health risks associated with its infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusAlcaligenes
SpeciesAlcaligenes faecalis
Strainstrain YBY

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Alcaligenes faecalis strain YBY
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water; hospital environments; hospital settings; HostAssociated; soil; water
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Mollusca
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Alcaligenes faecalis strain YBY Scaffold11, whole genome shotgun

Gene Summary

Adenine Count

932715 bp

Thymine Count

944125 bp

Guanine Count

1234179 bp

Cytosine Count

1216912 bp

Genome Length

4327931 bp

Protein-coding Genes

3809 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gp2, phage terminase, large subunit, putativeDF183_14605Not AvailablePositive3190144 - 319186564165.7
Gp4, phage portal protein, hk97 familyDF183_14610Not AvailablePositive3192007 - 319324245797.7
Putative capsid assembly protein/proteaseDF183_14615Not AvailablePositive3193239 - 319418033468.7
Gp6, major capsid head proteinDF183_14620Not AvailablePositive3194242 - 319554346078.7
Gp8, conserved hypothetical proteinDF183_14625Not AvailablePositive3195749 - 319625818385.2
Head closure proteinDF183_14630Not AvailablePositive3196264 - 319662313055.5
Hypothetical proteinDF183_14635Not AvailablePositive3196643 - 319715218524.1
Hypothetical proteinDF183_14640Not AvailablePositive3197149 - 319751413799.8
Tail proteinDF183_14645Not AvailablePositive3197560 - 319821623118.3
Hypothetical proteinDF183_14650Not AvailablePositive3198225 - 319854511650.9

Displaying genes 1 – 10 of 3954 in total

Metabolites

273 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000327(3S,4R)-3,4-dihydrophenanthrene-3,4-diolC14H12O2Chemical structure of (3S,4R)-3,4-dihydrophenanthrene-3,4-diolNot available
Average212.248Da
Monoisotopic212.083729626Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 273 metabolites

Health Effects

Health ConditionRelationReference
Diabetic ulcersCausesPMC10411081
EndocarditisCausesPMC10411081
MeningitisCausesPMC10411081
Skin and soft tissue infectionsCausesPMC10411081
Urinary tract infectionsCausesPMC10411081
PeritonitisCausesPMC10411081
PneumoniaCausesPMC10411081
PeritonitisCausesPMC3079607
Opportunistic infectionsCausesPMC7659064
CystitisCausesPMC7659064

Displaying health effects 1 – 10 of 29 in total