Corticimicrobacter populi strain 3d-2-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Corticimicrobacter

Description

Corticimicrobacter populi strain 3d-2-2 is characterized by having a single replicon, which indicates a streamlined genomic structure. The strain is cataloged under the accession number QETA00000000.1, providing a reference for researchers interested in its genomic and functional analysis. Corticimicrobacter species are known to inhabit specific environments, particularly those associated with plant materials, suggesting an ecological role in the decomposition and cycling of organic matter. The presence of Corticimicrobacter populi strain 3d-2-2 in such habitats may imply its involvement in the microbiome of decaying wood or leaf litter, where it could contribute to nutrient recycling and the maintenance of soil health. Understanding the genomic features of Corticimicrobacter populi strain 3d-2-2 offers insights into its potential metabolic capabilities and ecological functions. The single replicon suggests a possible adaptation to its ecological niche, potentially allowing for efficient replication and resource utilization in the environments it occupies. Further research on this strain could elucidate its specific roles in ecosystem processes and its interactions with other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusCorticimicrobacter
SpeciesCorticimicrobacter populi
Strainstrain 3d-2-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Corticimicrobacter populi strain 3d-2-2 Scaffold17, whole genome

Gene Summary

Adenine Count

680802 bp

Thymine Count

704282 bp

Guanine Count

1111896 bp

Cytosine Count

1055663 bp

Genome Length

3552643 bp

Protein-coding Genes

3196 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosyl-atp diphosphataseDD235_12180Not AvailableNegative2577382 - 257771112071.3
phosphoribosyl-amp cyclohydrolaseDD235_12185Not AvailableNegative2577719 - 257812915444.2
imidazole glycerol phosphate synthase subunit hisfDD235_12190Not AvailableNegative2578134 - 257892827758.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDD235_12195Not AvailableNegative2578963 - 257971526348.5
imidazole glycerol phosphate synthase subunit hishDD235_12200Not AvailableNegative2579760 - 258039223073.4
imidazoleglycerol-phosphate dehydratase hisbDD235_12205Not AvailableNegative2580389 - 258097621441.7
hypothetical proteinDD235_12210Not AvailableNegative2580993 - 258179928179.5
tetr family transcriptional regulatorDD235_12215Not AvailablePositive2581927 - 258250221694.5
carboxynorspermidine decarboxylaseDD235_12220Not AvailablePositive2582547 - 258366541781.9
saccharopine dehydrogenaseDD235_12225Not AvailablePositive2583704 - 258493945228.9

Displaying genes 2411 – 2420 of 3300 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.