Xanthomonas vasicola strain R5P

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas vasicola strain R5P is a rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain has been cataloged with a single replicon, indicating a streamlined genetic organization. The accession number for this strain is QEMD00000000.2, which provides a reference for researchers seeking genomic information. As a member of the Xanthomonas genus, Xanthomonas vasicola is known for its role as a plant pathogen, particularly affecting various crops. The flagella enable this strain to navigate its environment effectively, which can be critical in its interaction with host plants and the establishment of infections. Understanding the motility mechanisms in Xanthomonas vasicola strain R5P may offer insights into its pathogenicity and the dynamics of its spread in agricultural settings. The ecological implications of Xanthomonas vasicola strain R5P are significant, especially considering its potential impact on crop health and agricultural productivity. By examining its motility and genetic characteristics, researchers can develop strategies to manage its spread and mitigate the effects of the diseases it causes. Overall, the traits of this strain provide a foundation for further exploration into its biology and the ecological roles it plays in plant-pathogen interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas vasicola
Strainstrain R5P

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas vasicola strain R5P
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas vasicola strain R5P scf_27138_79, whole genome shotgun

Gene Summary

Adenine Count

873002 bp

Thymine Count

869914 bp

Guanine Count

1504924 bp

Cytosine Count

1512838 bp

Genome Length

4760678 bp

Protein-coding Genes

3839 genes

Non-Coding Genes

233 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system-associated protein tagfDEG04_020145Not AvailableNegative4341482 - 434213522550.2
type vi secretion system membrane subunit tssmDEG04_020150Not AvailableNegative4342132 - 4345590124061.0
type vi secretion system protein tsslDEG04_020155Not AvailableNegative4345594 - 434691047050.6
type vi secretion system baseplate subunit tsskDEG04_020160Not AvailableNegative4346912 - 434824948447.5
type vi secretion system-associated fha domain protein taghDEG04_020165Not AvailableNegative4348246 - 434963148379.8
hypothetical proteinDEG04_020170Not AvailableNegative4349628 - 435016719163.8
type vi secretion system tip protein vgrgDEG04_020175Not AvailableNegative4350176 - 435211370915.3
hypothetical proteinDEG04_020180Not AvailableNegative4352324 - 435278516752.9
hypothetical proteinDEG04_020185Not AvailableNegative4353381 - 435373712841.8
hypothetical proteinDEG04_020190Not AvailableNegative4353805 - 435438021402.4

Displaying genes 3751 – 3760 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.