Xanthomonas vasicola strain R5P

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas vasicola strain R5P is a rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain has been cataloged with a single replicon, indicating a streamlined genetic organization. The accession number for this strain is QEMD00000000.2, which provides a reference for researchers seeking genomic information. As a member of the Xanthomonas genus, Xanthomonas vasicola is known for its role as a plant pathogen, particularly affecting various crops. The flagella enable this strain to navigate its environment effectively, which can be critical in its interaction with host plants and the establishment of infections. Understanding the motility mechanisms in Xanthomonas vasicola strain R5P may offer insights into its pathogenicity and the dynamics of its spread in agricultural settings. The ecological implications of Xanthomonas vasicola strain R5P are significant, especially considering its potential impact on crop health and agricultural productivity. By examining its motility and genetic characteristics, researchers can develop strategies to manage its spread and mitigate the effects of the diseases it causes. Overall, the traits of this strain provide a foundation for further exploration into its biology and the ecological roles it plays in plant-pathogen interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas vasicola
Strainstrain R5P

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas vasicola strain R5P
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas vasicola strain R5P scf_27138_79, whole genome shotgun

Gene Summary

Adenine Count

873002 bp

Thymine Count

869914 bp

Guanine Count

1504924 bp

Cytosine Count

1512838 bp

Genome Length

4760678 bp

Protein-coding Genes

3839 genes

Non-Coding Genes

233 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
long-chain fatty acid--coa ligaseDEG04_016385Not AvailableNegative3468352 - 347003461381.7
aconitate hydratase acnaDEG04_016395Not AvailableNegative3470957 - 347372599212.2
abrb/maze/spovt family dna-binding domain-containing proteinDEG04_016400Not AvailablePositive3473873 - 34741218859.91
type ii toxin-antitoxin system vapc family toxinDEG04_016405Not AvailablePositive3474132 - 347454214781.0
bifunctional aconitate hydratase 2/2-methylisocitrate dehydrataseDEG04_016410Not AvailablePositive3474595 - 347718692862.2
alpha/beta fold hydrolaseDEG04_016415Not AvailablePositive3477381 - 347822630278.9
eal domain-containing proteinDEG04_016420Not AvailableNegative3478637 - 348092583787.5
chemotaxis response regulator protein-glutamate methylesteraseDEG04_016425Not AvailableNegative3481004 - 348208038030.3
chemoreceptor glutamine deamidase chedDEG04_016430Not AvailableNegative3482077 - 348267321694.2
chemotaxis protein cherDEG04_016435Not AvailableNegative3482676 - 348353632246.4

Displaying genes 3141 – 3150 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.