Xanthomonas vasicola strain R5P

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas vasicola strain R5P is a rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain has been cataloged with a single replicon, indicating a streamlined genetic organization. The accession number for this strain is QEMD00000000.2, which provides a reference for researchers seeking genomic information. As a member of the Xanthomonas genus, Xanthomonas vasicola is known for its role as a plant pathogen, particularly affecting various crops. The flagella enable this strain to navigate its environment effectively, which can be critical in its interaction with host plants and the establishment of infections. Understanding the motility mechanisms in Xanthomonas vasicola strain R5P may offer insights into its pathogenicity and the dynamics of its spread in agricultural settings. The ecological implications of Xanthomonas vasicola strain R5P are significant, especially considering its potential impact on crop health and agricultural productivity. By examining its motility and genetic characteristics, researchers can develop strategies to manage its spread and mitigate the effects of the diseases it causes. Overall, the traits of this strain provide a foundation for further exploration into its biology and the ecological roles it plays in plant-pathogen interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas vasicola
Strainstrain R5P

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas vasicola strain R5P
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas vasicola strain R5P scf_27138_79, whole genome shotgun

Gene Summary

Adenine Count

873002 bp

Thymine Count

869914 bp

Guanine Count

1504924 bp

Cytosine Count

1512838 bp

Genome Length

4760678 bp

Protein-coding Genes

3839 genes

Non-Coding Genes

233 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c oxidase subunit iDEG04_014250Not AvailableNegative3016783 - 301838759378.6
cytochrome c oxidase subunit iiDEG04_014255Not AvailableNegative3018426 - 301939134424.4
duf2244 domain-containing proteinDEG04_014260Not AvailableNegative3019408 - 301988417504.5
bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase putaDEG04_014265Not AvailablePositive3020162 - 3023362114606.0
is5/is1182 family transposaseDEG04_014275Not AvailablePositive3023559 - 30236744532.78
hypothetical proteinDEG04_014280Not AvailablePositive3023717 - 302442426104.3
class i sam-dependent methyltransferaseDEG04_014285Not AvailablePositive3024484 - 302517025660.2
had family hydrolaseDEG04_014295Not AvailableNegative3026762 - 302739122831.1
hypothetical proteinDEG04_014300Not AvailableNegative3027834 - 302855325998.8
m1 family peptidaseDEG04_014305Not AvailableNegative3028726 - 303075073765.7

Displaying genes 2761 – 2770 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.