Xanthomonas vasicola strain R5P

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas vasicola strain R5P is a rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain has been cataloged with a single replicon, indicating a streamlined genetic organization. The accession number for this strain is QEMD00000000.2, which provides a reference for researchers seeking genomic information. As a member of the Xanthomonas genus, Xanthomonas vasicola is known for its role as a plant pathogen, particularly affecting various crops. The flagella enable this strain to navigate its environment effectively, which can be critical in its interaction with host plants and the establishment of infections. Understanding the motility mechanisms in Xanthomonas vasicola strain R5P may offer insights into its pathogenicity and the dynamics of its spread in agricultural settings. The ecological implications of Xanthomonas vasicola strain R5P are significant, especially considering its potential impact on crop health and agricultural productivity. By examining its motility and genetic characteristics, researchers can develop strategies to manage its spread and mitigate the effects of the diseases it causes. Overall, the traits of this strain provide a foundation for further exploration into its biology and the ecological roles it plays in plant-pathogen interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas vasicola
Strainstrain R5P

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas vasicola strain R5P
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas vasicola strain R5P scf_27138_79, whole genome shotgun

Gene Summary

Adenine Count

873002 bp

Thymine Count

869914 bp

Guanine Count

1504924 bp

Cytosine Count

1512838 bp

Genome Length

4760678 bp

Protein-coding Genes

3839 genes

Non-Coding Genes

233 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorDEG04_012180Not AvailablePositive2563216 - 256398328548.3
glucose/galactose mfs transporterDEG04_012185Not AvailablePositive2564027 - 256530445095.7
laci family dna-binding transcriptional regulatorDEG04_012190Not AvailablePositive2565345 - 256641238462.6
sis domain-containing proteinDEG04_012195Not AvailablePositive2566419 - 256744735510.5
n-acetylglucosamine-6-phosphate deacetylaseDEG04_012200Not AvailablePositive2567450 - 256860439735.5
poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgadDEG04_012210Not AvailableNegative2569128 - 256973322406.1
poly-beta-1,6 n-acetyl-d-glucosamine synthaseDEG04_012215Not AvailableNegative2569730 - 257098348231.1
poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgabDEG04_012220Not AvailableNegative2570985 - 257287471896.3
poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaaDEG04_012225Not AvailableNegative2572885 - 257492776934.2
tonb-dependent receptorDEG04_012230Not AvailablePositive2575295 - 257584020296.5

Displaying genes 2381 – 2390 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.