Xanthomonas vasicola strain R5P

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas vasicola strain R5P is a rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain has been cataloged with a single replicon, indicating a streamlined genetic organization. The accession number for this strain is QEMD00000000.2, which provides a reference for researchers seeking genomic information. As a member of the Xanthomonas genus, Xanthomonas vasicola is known for its role as a plant pathogen, particularly affecting various crops. The flagella enable this strain to navigate its environment effectively, which can be critical in its interaction with host plants and the establishment of infections. Understanding the motility mechanisms in Xanthomonas vasicola strain R5P may offer insights into its pathogenicity and the dynamics of its spread in agricultural settings. The ecological implications of Xanthomonas vasicola strain R5P are significant, especially considering its potential impact on crop health and agricultural productivity. By examining its motility and genetic characteristics, researchers can develop strategies to manage its spread and mitigate the effects of the diseases it causes. Overall, the traits of this strain provide a foundation for further exploration into its biology and the ecological roles it plays in plant-pathogen interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas vasicola
Strainstrain R5P

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas vasicola strain R5P
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas vasicola strain R5P scf_27138_79, whole genome shotgun

Gene Summary

Adenine Count

873002 bp

Thymine Count

869914 bp

Guanine Count

1504924 bp

Cytosine Count

1512838 bp

Genome Length

4760678 bp

Protein-coding Genes

3839 genes

Non-Coding Genes

233 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
magnesium transporterDEG04_004865Not AvailableNegative1034412 - 103577949424.4
hypothetical proteinDEG04_004870Not AvailableNegative1035833 - 10360638340.18
glutathione-regulated potassium-efflux system protein kefbDEG04_004875Not AvailablePositive1036467 - 103827864951.4
glucose-6-phosphate dehydrogenaseDEG04_004880Not AvailableNegative1038415 - 104024167198.5
glycoside hydrolase family 15 proteinDEG04_004885Not AvailableNegative1040238 - 104203766764.9
phosphotyrosine protein phosphataseDEG04_004890Not AvailableNegative1042101 - 104243012481.4
hypothetical proteinDEG04_004895Not AvailableNegative1042457 - 1045777116097.0
ycgl domain-containing proteinDEG04_004900Not AvailableNegative1045770 - 10460309689.51
beta-ketoacyl-[acyl-carrier-protein] synthase family proteinDEG04_004905Not AvailablePositive1046249 - 104744841353.0
hypothetical proteinDEG04_004910Not AvailablePositive1047448 - 104822126158.1

Displaying genes 1061 – 1070 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.