Helicobacter pylori strain AFR58

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain AFR58 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement and spiral-shaped morphology. This strain is primarily host-associated, with a notable presence in various hosts including Homo sapiens (humans), Gallus gallus (chickens), Aves (birds), various primates, Mammalia, and specific rodent species such as Cricetinae. The organism is non-motile despite having flagella, and it typically exists as single cells. Helicobacter pylori AFR58 is mesophilic, with an optimal growth temperature of 37°C, which aligns with the human body temperature, facilitating its pathogenic interactions within the gastrointestinal tract. The bacterium has a single replicon and is characterized by a double membrane structure, common to Gram-negative organisms. This strain is well-documented for its association with several gastrointestinal diseases, including chronic gastric inflammation, peptic ulcer disease, and various forms of gastric cancer such as gastric adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. The health effects attributed to H. pylori AFR58 underscore its significant role in chronic conditions, including gastritis, GERD, and dyspepsia, thereby impacting human health profoundly. From an ecological perspective, the presence of H. pylori across diverse hosts suggests a complex biotic relationship that may influence host health and disease outcomes. Its adaptability to different environments and hosts reflects the intricate nature of host-pathogen interactions in gastrointestinal microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain AFR58

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain AFR58
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain AFR58 scaffold_73, whole genome shotgun

Gene Summary

Adenine Count

498393 bp

Thymine Count

508811 bp

Guanine Count

316388 bp

Cytosine Count

325184 bp

Genome Length

1648791 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretion system oncogenic effector cagaDD779_02765Not AvailablePositive544427 - 547978131612.0
glutamate racemaseDD779_02780Not AvailableNegative548458 - 54922528271.7
transcription termination factor rhoDD779_02785Not AvailableNegative549264 - 55058049547.6
50s ribosomal protein l31DD779_02790Not AvailablePositive550845 - 5510487652.32
16s rrna (cytidine(1402)-2'-o)-methyltransferaseDD779_02795Not AvailablePositive551073 - 55193632766.1
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbDD779_02800Not AvailablePositive551949 - 55263224840.0
sialidaseDD779_02805Not AvailablePositive552645 - 55361036962.2
hypothetical proteinDD779_02810Not AvailablePositive553607 - 55442831411.3
hypothetical proteinDD779_02815Not AvailableNegative554499 - 55493616830.8
acetyl-coa carboxylase carboxyl transferase subunit alphaDD779_02820Not AvailableNegative555415 - 55635334909.3

Displaying genes 561 – 570 of 1557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total