Helicobacter pylori strain APR133

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain APR133 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella. It typically exists as single cells and is optimized for a mesophilic environment, with an optimal growth temperature of 37°C. The strain is notable for being host-associated and demonstrates a free-living biotic relationship. It has a single replicon and is composed of two membranes. This strain has been identified in various hosts, including Homo sapiens, Gallus gallus, and other mammals and birds. Its pathogenicity in humans is significant, as it is associated with a range of serious health issues. These include chronic gastric inflammation, gastric ulcers, and more severe conditions such as gastric cancer, gastrointestinal diseases, and mucosa-associated lymphoid tissue (MALT) lymphoma. The presence of H. pylori is linked to various forms of dyspepsia and ulcers, including peptic and duodenal ulcers, and it can lead to atrophic gastritis and intestinal metaplasia. The ecological role of H. pylori strain APR133 highlights its adaptability to the human stomach, where it can survive and thrive while contributing to various gastrointestinal diseases. Its ability to induce chronic inflammation and potential carcinogenic effects underscores its significance in microbiological and medical research, particularly regarding gastric health and disease prevention.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain APR133

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain APR133
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain APR133 scaffold_37, whole genome

Gene Summary

Adenine Count

490787 bp

Thymine Count

500036 bp

Guanine Count

313828 bp

Cytosine Count

320920 bp

Genome Length

1625889 bp

Protein-coding Genes

1460 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
smi1/knr4 family proteinDD777_00005Not AvailablePositive1 - 722579.16
hypothetical proteinDD777_00010Not AvailablePositive74 - 42113824.3
16s ribosomal rnaNot AvailableNot AvailablePositive433 - 1941Not Available
urease accessory proteinDD777_00020Not AvailableNegative2935 - 373229710.9
urease accessory protein uregDD777_00025Not AvailableNegative3732 - 433121955.7
urease accessory protein urefDD777_00030Not AvailableNegative4360 - 512428616.5
urease accessory protein ureeDD777_00035Not AvailableNegative5147 - 552413928.0
urease accessory protein urefDD777_00040Not AvailableNegative5525 - 597817042.7
urease accessory protein ureeDD777_00045Not AvailableNegative6008 - 652019222.4
acid-activated urea channelDD777_00050Not AvailableNegative6522 - 710921609.6

Displaying genes 1 – 10 of 1502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total