Sphingobacterium corticibacter strain 2c-3

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium corticibacter strain 2c-3 is characterized as a rod-shaped bacterium. This morphological feature is significant as it can influence the bacterium's motility, interaction with its environment, and overall ecological role. The strain possesses a single replicon, which is indicative of its genomic organization and can be essential for understanding its genetic stability and replication processes. The strain is cataloged under the accession number QDKG00000000.1, which provides a unique identifier for its genomic data in biological databases. This accession can be used by researchers to access specific genetic information and further explore the capabilities and characteristics of Sphingobacterium corticibacter strain 2c-3. The ecological significance of Sphingobacterium species, including strain 2c-3, often relates to their role in soil and environmental bioremediation. These bacteria are known to contribute to the degradation of complex organic materials, thereby facilitating nutrient cycling within ecosystems. Understanding the traits of strain 2c-3, such as its rod shape and single replicon, can provide insights into its functional capabilities and potential applications in biotechnology or environmental management. Further studies may elucidate the specific roles this strain plays in its habitat, particularly in nutrient dynamics and the degradation of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium corticibacter
Strainstrain 2c-3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium corticibacter strain 2c-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium corticibacter strain 2c-3 Scaffold13, whole

Gene Summary

Adenine Count

1125290 bp

Thymine Count

1142764 bp

Guanine Count

823017 bp

Cytosine Count

816812 bp

Genome Length

3907883 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l22DC487_12700Not AvailableNegative2880852 - 288128316002.6
30s ribosomal protein s19DC487_12705Not AvailableNegative2881290 - 288155610128.3
50s ribosomal protein l2DC487_12710Not AvailableNegative2881556 - 288238329832.3
50s ribosomal protein l23DC487_12715Not AvailableNegative2882390 - 288268010619.1
50s ribosomal protein l4DC487_12720Not AvailableNegative2882683 - 288331223098.8
50s ribosomal protein l3DC487_12725Not AvailableNegative2883319 - 288393621801.4
damage-inducible protein dinbDC487_12730Not AvailablePositive2884226 - 288470218891.6
transcriptional regulatorDC487_12735Not AvailableNegative2884755 - 288572337442.1
ragb/susd family nutrient uptake outer membrane proteinDC487_12740Not AvailableNegative2885997 - 288784470817.4
tonb-dependent receptorDC487_12745Not AvailableNegative2887766 - 2891050121742.0

Displaying genes 2531 – 2540 of 3404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.