Sphingobacterium corticibacter strain 2c-3

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium corticibacter strain 2c-3 is characterized as a rod-shaped bacterium. This morphological feature is significant as it can influence the bacterium's motility, interaction with its environment, and overall ecological role. The strain possesses a single replicon, which is indicative of its genomic organization and can be essential for understanding its genetic stability and replication processes. The strain is cataloged under the accession number QDKG00000000.1, which provides a unique identifier for its genomic data in biological databases. This accession can be used by researchers to access specific genetic information and further explore the capabilities and characteristics of Sphingobacterium corticibacter strain 2c-3. The ecological significance of Sphingobacterium species, including strain 2c-3, often relates to their role in soil and environmental bioremediation. These bacteria are known to contribute to the degradation of complex organic materials, thereby facilitating nutrient cycling within ecosystems. Understanding the traits of strain 2c-3, such as its rod shape and single replicon, can provide insights into its functional capabilities and potential applications in biotechnology or environmental management. Further studies may elucidate the specific roles this strain plays in its habitat, particularly in nutrient dynamics and the degradation of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium corticibacter
Strainstrain 2c-3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium corticibacter strain 2c-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium corticibacter strain 2c-3 Scaffold13, whole

Gene Summary

Adenine Count

1125290 bp

Thymine Count

1142764 bp

Guanine Count

823017 bp

Cytosine Count

816812 bp

Genome Length

3907883 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yjgp/yjgq family permeaseDC487_11545Not AvailableNegative2646179 - 264726141024.7
trna guanosine(34) transglycosylase tgtDC487_11550Not AvailableNegative2647269 - 264839942595.5
hypothetical proteinDC487_11555Not AvailableNegative2648517 - 264912821674.7
transmembrane glycosyltransferaseDC487_11560Not AvailablePositive2649355 - 265042541272.3
16s rrna (guanine(527)-n(7))-methyltransferase rsmgDC487_11565Not AvailablePositive2650427 - 265106224064.1
hypothetical proteinDC487_11570Not AvailableNegative2651090 - 265169824318.9
hypothetical proteinDC487_11575Not AvailableNegative2651747 - 26519778692.24
dna-protecting protein dpraDC487_11580Not AvailablePositive2652118 - 265322140776.5
acetyl-coa carboxylase carboxyl transferase subunit betaDC487_11590Not AvailablePositive2653572 - 265441430999.7
merr family transcriptional regulatorDC487_11595Not AvailablePositive2654546 - 265488113339.1

Displaying genes 2301 – 2310 of 3404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.