Sphingobacterium corticibacter strain 2c-3

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium corticibacter strain 2c-3 is characterized as a rod-shaped bacterium. This morphological feature is significant as it can influence the bacterium's motility, interaction with its environment, and overall ecological role. The strain possesses a single replicon, which is indicative of its genomic organization and can be essential for understanding its genetic stability and replication processes. The strain is cataloged under the accession number QDKG00000000.1, which provides a unique identifier for its genomic data in biological databases. This accession can be used by researchers to access specific genetic information and further explore the capabilities and characteristics of Sphingobacterium corticibacter strain 2c-3. The ecological significance of Sphingobacterium species, including strain 2c-3, often relates to their role in soil and environmental bioremediation. These bacteria are known to contribute to the degradation of complex organic materials, thereby facilitating nutrient cycling within ecosystems. Understanding the traits of strain 2c-3, such as its rod shape and single replicon, can provide insights into its functional capabilities and potential applications in biotechnology or environmental management. Further studies may elucidate the specific roles this strain plays in its habitat, particularly in nutrient dynamics and the degradation of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium corticibacter
Strainstrain 2c-3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium corticibacter strain 2c-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium corticibacter strain 2c-3 Scaffold13, whole

Gene Summary

Adenine Count

1125290 bp

Thymine Count

1142764 bp

Guanine Count

823017 bp

Cytosine Count

816812 bp

Genome Length

3907883 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cof-type had-iib family hydrolaseDC487_09605Not AvailableNegative2206068 - 220685928977.4
sam-dependent methyltransferaseDC487_09610Not AvailablePositive2206941 - 220814646211.9
tonb-dependent receptorDC487_09615Not AvailableNegative2208143 - 221023978186.9
hypothetical proteinDC487_09620Not AvailableNegative2210265 - 221156049022.8
1-aminocyclopropane-1-carboxylate deaminaseDC487_09625Not AvailableNegative2211578 - 221246232866.4
rna pseudouridine synthaseDC487_09630Not AvailablePositive2212526 - 221355739253.8
4-amino-4-deoxychorismate lyaseDC487_09635Not AvailablePositive2213580 - 221443732681.5
glycosyl transferaseDC487_09640Not AvailablePositive2214549 - 221553537040.7
hypothetical proteinDC487_09645Not AvailablePositive2215539 - 221620423842.3
arac family transcriptional regulatorDC487_09650Not AvailablePositive2216511 - 221738634214.9

Displaying genes 1921 – 1930 of 3404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.