Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain TPD7005 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1073976 bp
Thymine Count
1086538 bp
Guanine Count
1515935 bp
Cytosine Count
1493195 bp
Genome Length
5169670 bp
Protein-coding Genes
4676 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | DC415_10625 | Not Available | Positive | 2268661 - 2269356 | 26044.2 |
| type ii 3-dehydroquinate dehydratase | DC415_10630 | Not Available | Negative | 2269334 - 2269771 | 16084.3 |
| shikimate dehydrogenase | DC415_10635 | Not Available | Negative | 2269768 - 2270637 | 31069.2 |
| amino acid abc transporter atp-binding protein | DC415_10640 | Not Available | Negative | 2270694 - 2271452 | 27913.0 |
| abc transporter substrate-binding protein | DC415_10645 | Not Available | Negative | 2271464 - 2272303 | 29552.5 |
| amino acid abc transporter permease | DC415_10650 | Not Available | Negative | 2272417 - 2273067 | 23221.1 |
| amino acid abc transporter permease | DC415_10655 | Not Available | Negative | 2273078 - 2273746 | 24029.2 |
| 3-carboxy-cis,cis-muconate cycloisomerase | DC415_10660 | Not Available | Negative | 2274072 - 2275154 | 38094.9 |
| protocatechuate 3,4-dioxygenase subunit alpha | DC415_10665 | Not Available | Negative | 2275160 - 2275780 | 22595.6 |
| protocatechuate 3,4-dioxygenase subunit beta | DC415_10670 | Not Available | Negative | 2275782 - 2276522 | 27915.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


