Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain TPD7005 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1073976 bp
Thymine Count
1086538 bp
Guanine Count
1515935 bp
Cytosine Count
1493195 bp
Genome Length
5169670 bp
Protein-coding Genes
4676 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | DC415_00520 | Not Available | Positive | 107684 - 108937 | 45469.3 |
| hypothetical protein | DC415_00525 | Not Available | Positive | 108940 - 109341 | 14240.1 |
| sarcosine oxidase subunit delta family protein | DC415_00530 | Not Available | Positive | 109351 - 109665 | 12103.1 |
| sarcosine oxidase subunit alpha | DC415_00535 | Not Available | Positive | 109662 - 112622 | 106372.0 |
| sarcosine oxidase subunit gamma | DC415_00540 | Not Available | Positive | 112615 - 113163 | 19104.8 |
| amino acid permease | DC415_00550 | Not Available | Negative | 113996 - 115366 | 47581.3 |
| hypothetical protein | DC415_00555 | Not Available | Negative | 115338 - 115436 | 3413.34 |
| duf2332 domain-containing protein | DC415_00560 | Not Available | Negative | 115561 - 116598 | 38322.3 |
| nodulation protein n | DC415_00565 | Not Available | Negative | 116713 - 117198 | 17663.9 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 119320 - 119416 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


