Sphingomonas sp. TPD3009

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TPD3009 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. It is noteworthy that this species contains two replicons, indicating a more complex genomic structure that may contribute to its adaptability and survival in various environments. The genomic information for Sphingomonas sp. TPD3009 is accessible through two specific accession numbers: QDFK00000000.1 and QDFN00000000.1. The presence of flagella is significant as it allows for movement towards favorable conditions, which can be crucial for colonization and nutrient acquisition in diverse habitats. The dual replicon structure could imply a unique evolutionary advantage, potentially allowing for greater genetic diversity and resilience in fluctuating environmental conditions. Biologically, the traits observed in Sphingomonas sp. TPD3009 may play essential roles in ecological interactions within its environment. For example, motility could facilitate the bacterium's ability to thrive in biogeochemical cycles, particularly in bioremediation processes where it might assist in the degradation of pollutants. Thus, Sphingomonas sp. TPD3009 exemplifies the complex interplay between microbial morphology, genomic organization, and ecological roles, underscoring the importance of microbial diversity in environmental health and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TPD3009
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TPD3009
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TPD3009 Contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

1073976 bp

Thymine Count

1086538 bp

Guanine Count

1515935 bp

Cytosine Count

1493195 bp

Genome Length

5169670 bp

Protein-coding Genes

4676 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate-5-semialdehyde dehydrogenaseDCP16_19065Not AvailablePositive4020754 - 402199543292.2
nicotinic acid mononucleotide adenylyltransferaseDCP16_19070Not AvailablePositive4022037 - 402263322043.5
ribosome silencing factorDCP16_19075Not AvailablePositive4022697 - 402317017291.6
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhDCP16_19080Not AvailablePositive4023374 - 402385617572.3
hypothetical proteinDCP16_19085Not AvailablePositive4024076 - 402540448013.9
s41 family peptidaseDCP16_19090Not AvailablePositive4025394 - 402672247231.6
hypothetical proteinDCP16_19095Not AvailablePositive4026804 - 402799441894.0
rna pyrophosphohydrolaseDCP16_19100Not AvailablePositive4028031 - 402854019158.8
bacterioferritinDCP16_19105Not AvailableNegative4028610 - 402912519556.1
(2fe-2s)-binding proteinDCP16_19110Not AvailableNegative4029067 - 402937812191.6

Displaying genes 3771 – 3780 of 8496 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.