Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingomonas |
| Species | Sphingomonas sp. TPD3009 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingomonas sp. TPD3009 Contig_8, whole genome shotgun sequence.
Gene Summary
Adenine Count
1073976 bp
Thymine Count
1086538 bp
Guanine Count
1515935 bp
Cytosine Count
1493195 bp
Genome Length
5169670 bp
Protein-coding Genes
4676 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rata family toxin | DCP16_14070 | Not Available | Positive | 3000658 - 3001107 | 17553.1 |
| damage-inducible protein cina | DCP16_14075 | Not Available | Negative | 3001095 - 3001598 | 17596.2 |
| bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DCP16_14080 | Not Available | Negative | 3001595 - 3002782 | 41759.0 |
| trna dihydrouridine synthase dusb | DCP16_14085 | Not Available | Positive | 3003037 - 3004053 | 36457.9 |
| two-component sensor histidine kinase | DCP16_14090 | Not Available | Positive | 3004050 - 3005195 | 41083.1 |
| nitrogen regulation protein nr(i) | DCP16_14095 | Not Available | Positive | 3005192 - 3006643 | 54077.2 |
| pas domain-containing sensor histidine kinase | DCP16_14100 | Not Available | Positive | 3006792 - 3009056 | 82314.3 |
| sigma-54-dependent fis family transcriptional regulator | DCP16_14105 | Not Available | Positive | 3009046 - 3010410 | 50450.4 |
| trk system potassium transporter trka | DCP16_14110 | Not Available | Positive | 3010457 - 3011833 | 50061.3 |
| rna-binding protein hfq | DCP16_14115 | Not Available | Positive | 3012021 - 3012263 | 9029.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
