Sphingomonas sp. TPD3009

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TPD3009 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. It is noteworthy that this species contains two replicons, indicating a more complex genomic structure that may contribute to its adaptability and survival in various environments. The genomic information for Sphingomonas sp. TPD3009 is accessible through two specific accession numbers: QDFK00000000.1 and QDFN00000000.1. The presence of flagella is significant as it allows for movement towards favorable conditions, which can be crucial for colonization and nutrient acquisition in diverse habitats. The dual replicon structure could imply a unique evolutionary advantage, potentially allowing for greater genetic diversity and resilience in fluctuating environmental conditions. Biologically, the traits observed in Sphingomonas sp. TPD3009 may play essential roles in ecological interactions within its environment. For example, motility could facilitate the bacterium's ability to thrive in biogeochemical cycles, particularly in bioremediation processes where it might assist in the degradation of pollutants. Thus, Sphingomonas sp. TPD3009 exemplifies the complex interplay between microbial morphology, genomic organization, and ecological roles, underscoring the importance of microbial diversity in environmental health and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TPD3009
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TPD3009
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TPD3009 Contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

1073976 bp

Thymine Count

1086538 bp

Guanine Count

1515935 bp

Cytosine Count

1493195 bp

Genome Length

5169670 bp

Protein-coding Genes

4676 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide deformylaseDCP16_08405Not AvailablePositive1787325 - 178783719120.2
methionyl-trna formyltransferaseDCP16_08410Not AvailablePositive1787889 - 178882133370.8
trna pseudouridine(38-40) synthase truaDCP16_08415Not AvailablePositive1788825 - 178962529575.2
hypothetical proteinDCP16_08420Not AvailableNegative1789643 - 179023922413.5
succinyl-diaminopimelate desuccinylaseDCP16_08425Not AvailableNegative1790223 - 179141942581.3
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseDCP16_08430Not AvailableNegative1791571 - 179242530529.4
log family proteinDCP16_08435Not AvailablePositive1792566 - 179343232316.9
nucleoside hydrolaseDCP16_08440Not AvailableNegative1793522 - 179446634319.6
heat-shock protein hsp20DCP16_08445Not AvailablePositive1794778 - 179520316019.2
duf1150 domain-containing proteinDCP16_08450Not AvailablePositive1795371 - 17956289426.4

Displaying genes 1721 – 1730 of 8496 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.