Chitinophaga parva strain LY-1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga parva strain LY-1 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which indicates a streamlined genetic organization. The genomic information for this strain is recorded under the accession number QCYK00000000.1. In terms of ecological significance, members of the genus Chitinophaga are known for their ability to degrade chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. This capability suggests that Chitinophaga parva strain LY-1 may play a role in nutrient cycling within its habitat, potentially contributing to the decomposition of organic matter. Through the breakdown of chitin, this bacterium could help facilitate the recycling of nitrogen and carbon in ecosystems where it is present. Understanding the specific characteristics and ecological roles of Chitinophaga parva strain LY-1 enhances our knowledge of microbial diversity and the functional roles of bacteria in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga parva
Strainstrain LY-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga parva strain LY-1 Scaffold11_1, whole genome shotgun

Gene Summary

Adenine Count

1462274 bp

Thymine Count

1477426 bp

Guanine Count

1633585 bp

Cytosine Count

1572775 bp

Genome Length

6146060 bp

Protein-coding Genes

4933 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ighmbp2 family helicaseDCC81_20110Not AvailablePositive4879064 - 488096871142.9
thua domain-containing proteinDCC81_20115Not AvailablePositive4881108 - 488193531378.1
phosphoesterase hxtxDCC81_20120Not AvailablePositive4881939 - 488246319714.6
hypothetical proteinDCC81_20125Not AvailableNegative4882551 - 488301817807.5
hypothetical proteinDCC81_20130Not AvailableNegative4883483 - 48837018321.99
sigma-54-dependent fis family transcriptional regulatorDCC81_20135Not AvailablePositive4883952 - 488540953882.6
arac family transcriptional regulatorDCC81_20140Not AvailablePositive4885858 - 488669132335.9
hypothetical proteinDCC81_20145Not AvailableNegative4887215 - 488786223818.5
dead/deah box helicaseDCC81_20150Not AvailableNegative4888004 - 488933849691.9
radical sam proteinDCC81_20155Not AvailablePositive4889398 - 489159982729.8

Displaying genes 4031 – 4040 of 5015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.