Chitinophaga parva strain LY-1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga parva strain LY-1 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which indicates a streamlined genetic organization. The genomic information for this strain is recorded under the accession number QCYK00000000.1. In terms of ecological significance, members of the genus Chitinophaga are known for their ability to degrade chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. This capability suggests that Chitinophaga parva strain LY-1 may play a role in nutrient cycling within its habitat, potentially contributing to the decomposition of organic matter. Through the breakdown of chitin, this bacterium could help facilitate the recycling of nitrogen and carbon in ecosystems where it is present. Understanding the specific characteristics and ecological roles of Chitinophaga parva strain LY-1 enhances our knowledge of microbial diversity and the functional roles of bacteria in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga parva
Strainstrain LY-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga parva strain LY-1 Scaffold11_1, whole genome shotgun

Gene Summary

Adenine Count

1462274 bp

Thymine Count

1477426 bp

Guanine Count

1633585 bp

Cytosine Count

1572775 bp

Genome Length

6146060 bp

Protein-coding Genes

4933 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxinDCC81_09750Not AvailablePositive2330905 - 233211644909.9
hypothetical proteinDCC81_09755Not AvailablePositive2332266 - 233280819882.4
hypothetical proteinDCC81_09760Not AvailablePositive2332866 - 233422449932.3
dna mismatch repair protein muttDCC81_09765Not AvailablePositive2334225 - 233463815355.3
duf1080 domain-containing proteinDCC81_09770Not AvailablePositive2334674 - 233544728277.7
tonb-dependent receptorDCC81_09775Not AvailablePositive2335581 - 233807990991.7
susc/raga family tonb-linked outer membrane proteinDCC81_09780Not AvailablePositive2338524 - 2341676115835.0
ragb/susd family nutrient uptake outer membrane proteinDCC81_09785Not AvailablePositive2341714 - 234326158273.1
alpha-galactosidaseDCC81_09795Not AvailablePositive2345353 - 234753683060.2
gntr family transcriptional regulatorDCC81_09800Not AvailablePositive2347547 - 234856338953.0

Displaying genes 1981 – 1990 of 5015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.