Pelagivirga sediminicola strain BH-SD19

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pelagivirga

Description

Pelagivirga sediminicola strain BH-SD19 is characterized by possessing a single replicon, which indicates a streamlined genomic structure typical of certain microbial species. This trait can contribute to the organism’s adaptability and efficiency in its ecological niche. The strain is cataloged under the accession number QCYH00000000.1, which allows for easy reference and retrieval of its genomic data in biological databases. As a member of the genus Pelagivirga, this strain is likely adapted to a marine environment, suggesting its role in biogeochemical cycles within aquatic ecosystems. The single replicon may reflect evolutionary pressures that favor simplicity and efficiency in resource utilization, particularly in sedimentary habitats where nutrient availability can fluctuate. This streamlined genomic architecture may enable Pelagivirga sediminicola strain BH-SD19 to thrive in specific ecological niches, potentially contributing to sediment processes and microbial community dynamics. Understanding the genetic and ecological roles of such strains is crucial for comprehending the overall functioning of marine ecosystems and the microbial diversity they harbor.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPelagivirga
SpeciesPelagivirga sediminicola
Strainstrain BH-SD19

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagivirga sediminicola strain BH-SD19 BH19_scaffold93, whole

Gene Summary

Adenine Count

714572 bp

Thymine Count

720933 bp

Guanine Count

1280151 bp

Cytosine Count

1266141 bp

Genome Length

3981807 bp

Protein-coding Genes

3718 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ring-hydroxylating oxygenase subunit alphaDC366_01235Not AvailablePositive263307 - 26451546195.4
spermidine/putrescine abc transporterDC366_01240Not AvailablePositive264664 - 26545529044.5
spermidine/putrescine abc transporterDC366_01245Not AvailablePositive265455 - 26628830213.9
fe3+/spermidine/putrescine abc transporter atp-binding proteinDC366_01250Not AvailablePositive266291 - 26739439647.8
eama family transporterDC366_01255Not AvailablePositive267646 - 26854530904.0
polyamine abc transporter substrate-binding proteinDC366_01260Not AvailableNegative268616 - 26971340517.9
qace family quaternary ammonium compound efflux smr transporterDC366_01265Not AvailablePositive269975 - 27029511257.3
aminotransferaseDC366_01270Not AvailableNegative270339 - 27171550655.6
tetr family transcriptional regulatorDC366_01275Not AvailablePositive271858 - 27255926111.8
ribosomal subunit interface proteinDC366_01280Not AvailableNegative272546 - 27373343944.9

Displaying genes 271 – 280 of 3787 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.