Pelagivirga sediminicola strain BH-SD19

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pelagivirga

Description

Pelagivirga sediminicola strain BH-SD19 is characterized by possessing a single replicon, which indicates a streamlined genomic structure typical of certain microbial species. This trait can contribute to the organism’s adaptability and efficiency in its ecological niche. The strain is cataloged under the accession number QCYH00000000.1, which allows for easy reference and retrieval of its genomic data in biological databases. As a member of the genus Pelagivirga, this strain is likely adapted to a marine environment, suggesting its role in biogeochemical cycles within aquatic ecosystems. The single replicon may reflect evolutionary pressures that favor simplicity and efficiency in resource utilization, particularly in sedimentary habitats where nutrient availability can fluctuate. This streamlined genomic architecture may enable Pelagivirga sediminicola strain BH-SD19 to thrive in specific ecological niches, potentially contributing to sediment processes and microbial community dynamics. Understanding the genetic and ecological roles of such strains is crucial for comprehending the overall functioning of marine ecosystems and the microbial diversity they harbor.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPelagivirga
SpeciesPelagivirga sediminicola
Strainstrain BH-SD19

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagivirga sediminicola strain BH-SD19 BH19_scaffold93, whole

Gene Summary

Adenine Count

714572 bp

Thymine Count

720933 bp

Guanine Count

1280151 bp

Cytosine Count

1266141 bp

Genome Length

3981807 bp

Protein-coding Genes

3718 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mate family efflux transporterDC366_05040Not AvailablePositive1055940 - 105725946372.7
hypothetical proteinDC366_05045Not AvailableNegative1057256 - 105884556830.9
arsenate reductase (glutaredoxin)DC366_05050Not AvailableNegative1058850 - 105919712305.0
dihydroorotate dehydrogenase (quinone)DC366_05055Not AvailableNegative1059194 - 106025237117.7
duf952 domain-containing proteinDC366_05060Not AvailableNegative1060249 - 106058712326.6
folate-binding protein ygfzDC366_05065Not AvailableNegative1060630 - 106136126157.3
glycosyl transferaseDC366_05070Not AvailablePositive1061430 - 106210124267.7
Trna-glyNot AvailableNot AvailablePositive1062183 - 1062256Not Available
sarcosine oxidase subunit gammaDC366_05080Not AvailableNegative1062365 - 106293419597.5
sarcosine oxidase subunit alphaDC366_05085Not AvailableNegative1062927 - 1065878106463.0

Displaying genes 1021 – 1030 of 3787 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.