Helicobacter pylori strain 18:2

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 18:2 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0 °C, aligning with the physiological conditions typically found in the gastric environment of its host. As a host-associated microbe, H. pylori strain 18:2 is adapted to colonize the stomach, where it can influence host physiology and contribute to a complex interplay of microbial interactions. The microaerophilic nature of H. pylori strain 18:2 indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat in the gastric mucosa, where oxygen availability is limited due to the presence of gastric acid and other microbial inhabitants. The spiral morphology of this strain may play a role in its motility, allowing for efficient movement through the viscous gastric mucus layer, facilitating colonization and potentially influencing the gastric environment. Understanding the traits of H. pylori strain 18:2 not only sheds light on its survival mechanisms within the host but also underscores the bacterium's ecological role in the human microbiome. The interactions of H. pylori with the gastric environment may provide insights into the evolutionary adaptations of microorganisms in response to specific host conditions, particularly in relation to acid tolerance and nutrient acquisition in microaerophilic niches.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain 18:2

Accession NumberQBPS00000000.1

Gene Summary

Adenine Count

500659 bp

Thymine Count

505581 bp

Guanine Count

316432 bp

Cytosine Count

323783 bp

Genome Length

1646455 bp

Protein-coding Genes

1505 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinC2S19_00005Not Available+169 - 106234935.2
16s ribosomal rnaNot AvailableNot Available+507 - 2015Not Available
hypothetical proteinC2S19_00010Not Available-1087 - 227145922.1
hypothetical proteinC2S19_00015Not Available-2315 - 259911340.5
chromosome partitioning protein paraC2S19_00020Not Available-2682 - 333824723.9
site-specific dna-methyltransferaseC2S19_00025Not Available-3394 - 35566205.43
dna (cytosine-5-)-methyltransferaseC2S19_00030Not Available-3553 - 423425506.2
replication initiation proteinC2S19_00035Not Available+4792 - 513513271.8
dna methyltransferaseC2S19_00045Not Available+5590 - 643332045.0
restriction endonucleaseC2S19_00050Not Available-6681 - 727723147.8

Displaying genes 1 – 10 of 1547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

26 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003761dehypoxanthine futalosineC14H16O7Chemical structure of dehypoxanthine futalosineNot available
Average296.275Da
Monoisotopic296.0896029Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da

Displaying 1–10 of 26 metabolites